1 Response_reg#1
4-114 aa · 111 aa · 54.4% of protein
Raw token
Response_reg:4:3.04e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SSON_RS13710
Response regulator, unclassified
Shigella sonnei Ss046 · GCF_000092525
ClassRRTypeunclassifiedLength204 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092525#SSON_RS13710Stable P2CS identifier used across views.
GenomeGCF_000092525Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 204 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation2 items
2 GerE#2
142-198 aa · 57 aa · 27.9% of protein
Raw token
GerE:142:4.25e-22:198:57:57- Raw architecture: Response_reg:4:3.04e-33:114:111:111#GerE:142:4.25e-22:198:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092525::NC_007384.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2596923-2601135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSSO_2460%2CSSON_2460RefSeq proteinWP_000991366.1
Context group ID
GCF_000092525::NC_007384.1::G00021Context members
SSON_RS13710SSON_RS13715
Partner locus tags
SSON_RS13710SSON_RS13715
Partner old locus tags
SSO_2460%2CSSON_2460SSO_2461%2CSSON_2461
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000991366.1Primary protein accession used for annex mappings.
UniProt accessionQ3YZG1Primary UniProt accession resolved in the annex database.
UniProt IDQ3YZG1_SHISSDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSSON_RS13710Primary locus identifier stored in the genes table.
Old locus tagSSO_2460%2CSSON_2460Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007384.1Sequence record reported by the local genomic context database.
Genomic interval2 596 923-2 597 537 nt615 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 596 923-2 601 135 ntGCF_000092525::NC_007384.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092525::NC_007384.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007384.1All displayed genes belong to this local TCS context.
Neighborhood span2 596 923-2 601 135 nt4 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 596 923 nt2 601 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SSON_RS13710GCF_000092525#SSON_RS13710
RRunclassifiedCurrent focus
2 596 923-2 597 537 nt · Forward (+)
SSON_RS13715GCF_000092525#SSON_RS13715
HKUnorthodox
2 597 542-2 601 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092525#SSON_RS13710The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2098224
Simplified PFAM architecture for RROC_2098224
PFAM domain coverage: 168 / 204 aa (82.4%)
1 aa204 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-114] | GerE[142-198]
- Domain count: 2
- Matched identifier: RROC_2098224
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GerE 142-198 ; GerE 142-198
Cluster members and taxonomy
Representative gene: GCF_000092525#SSON_RS13710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 269 · GCF_000092525
AssemblyASM9252v1 · Complete Genomehaploid
Genome composition5 055 316 bp · 51,0% GCShigella sonnei Ss046
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key