1 His_kinase#1
370-448 aa · 79 aa · 14.1% of protein
Raw token
His_kinase:370:4.42e-33:448:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SSON_RS12070
Histidine kinase, Classic
Shigella sonnei Ss046 · GCF_000092525
ClassHKTypeClassicLength561 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092525#SSON_RS12070Stable P2CS identifier used across views.
GenomeGCF_000092525Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length561 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 561 aa (29.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa561 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
468-556 aa · 89 aa · 15.9% of protein
Raw token
HATPase_c:468:0.00000000431:556:105:109- Raw architecture: His_kinase:370:4.42e-33:448:80:80#HATPase_c:468:0.00000000431:556:105:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092525::NC_007384.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2275575-2277976Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSSO_2172%2CSSON_2172RefSeq proteinWP_005136804.1
Context group ID
GCF_000092525::NC_007384.1::G00016Context members
SSON_RS12065SSON_RS12070
Partner locus tags
SSON_RS12065SSON_RS12070
Partner old locus tags
SSO_2171%2CSSON_2171SSO_2172%2CSSON_2172
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005136804.1Primary protein accession used for annex mappings.
UniProt accessionQ3Z089Primary UniProt accession resolved in the annex database.
UniProt IDQ3Z089_SHISSDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSSON_RS12070Primary locus identifier stored in the genes table.
Old locus tagSSO_2172%2CSSON_2172Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007384.1Sequence record reported by the local genomic context database.
Genomic interval2 276 291-2 277 976 nt1 686 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 275 575-2 277 976 ntGCF_000092525::NC_007384.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092525::NC_007384.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007384.1All displayed genes belong to this local TCS context.
Neighborhood span2 275 575-2 277 976 nt2 402 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 275 575 nt2 277 976 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SSON_RS12065GCF_000092525#SSON_RS12065
RRLytTR
2 275 575-2 276 294 nt · Reverse (-)
SSON_RS12070GCF_000092525#SSON_RS12070
HKClassicCurrent focus
2 276 291-2 277 976 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092525#SSON_RS12070The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + GAF_2 + His_kinase3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1253794
Simplified PFAM architecture for HKOC_1253794
PFAM domain coverage: 358 / 561 aa (63.8%)
1 aa561 aa
5TM-5TMR_LYTGAF_2His_kinase
- Simplified architecture: 5TM-5TMR_LYT + GAF_2 + His_kinase
- Raw architecture: 5TM-5TMR_LYT[27-196] | GAF_2[243-352] | His_kinase[371-448]
- Domain count: 3
- Matched identifier: HKOC_1253794
- Positioned domains: 5TM-5TMR_LYT 27-196 ; GAF_2 243-352 ; His_kinase 371-448
Cluster members and taxonomy
Representative gene: GCF_000092525#SSON_RS12070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 269 · GCF_000092525
AssemblyASM9252v1 · Complete Genomehaploid
Genome composition5 055 316 bp · 51,0% GCShigella sonnei Ss046
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key