1 HisKA_3#1
211-274 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:211:0.00000000000000871:274:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLJ_RS04215
Histidine kinase, Classic
Bifidobacterium longum subsp. longum JDM301 · GCF_000092325
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092325#BLJ_RS04215Stable P2CS identifier used across views.
GenomeGCF_000092325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 446 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
321-439 aa · 119 aa · 26.7% of protein
Raw token
HATPase_c:321:0.0000000971:439:120:109- Raw architecture: HisKA_3:211:0.00000000000000871:274:64:68#HATPase_c:321:0.0000000971:439:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092325::NC_014169.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1011540-1013533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLJ_0836RefSeq proteinWP_013140609.1
Context group ID
GCF_000092325::NC_014169.1::G00008Context members
BLJ_RS04210BLJ_RS04215
Partner locus tags
BLJ_RS04210BLJ_RS04215
Partner old locus tags
BLJ_0835BLJ_0836
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013140609.1Primary protein accession used for annex mappings.
UniProt accessionD6ZTU6Primary UniProt accession resolved in the annex database.
UniProt IDD6ZTU6_BIFLJDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLJ_RS04215Primary locus identifier stored in the genes table.
Old locus tagBLJ_0836Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014169.1Sequence record reported by the local genomic context database.
Genomic interval1 012 193-1 013 533 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 011 540-1 013 533 ntGCF_000092325::NC_014169.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092325::NC_014169.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014169.1All displayed genes belong to this local TCS context.
Neighborhood span1 011 540-1 013 533 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 011 540 nt1 013 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLJ_RS04210GCF_000092325#BLJ_RS04210
RRNarL
1 011 540-1 012 193 nt · Reverse (-)
BLJ_RS04215GCF_000092325#BLJ_RS04215
HKClassicCurrent focus
1 012 193-1 013 533 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS04215The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2010491
Simplified PFAM architecture for HKOC_2010491
PFAM domain coverage: 66 / 446 aa (14.8%)
1 aa446 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[211-276]
- Domain count: 1
- Matched identifier: HKOC_2010491
- Positioned domains: HisKA_3 211-276
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS04215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 759 350 · GCF_000092325
AssemblyASM9232v1 · Complete Genomehaploid
Genome composition2 477 838 bp · 60,0% GCBifidobacterium longum subsp. longum JDM301
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key