1 Response_reg#1
9-136 aa · 128 aa · 44.8% of protein
Raw token
Response_reg:9:7.72e-29:136:128:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLJ_RS04050
Response regulator NarL family
Bifidobacterium longum subsp. longum JDM301 · GCF_000092325
ClassRRTypeNarLLength286 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092325#BLJ_RS04050Stable P2CS identifier used across views.
GenomeGCF_000092325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length286 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 286 aa (65.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
223-280 aa · 58 aa · 20.3% of protein
Raw token
HTH_LUXR:223:8.54e-25:280:58:58- Raw architecture: Response_reg:9:7.72e-29:136:128:111#HTH_LUXR:223:8.54e-25:280:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092325::NC_014169.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span973959-977296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLJ_0802RefSeq proteinWP_013140579.1
Context group ID
GCF_000092325::NC_014169.1::G00007Context members
BLJ_RS04050BLJ_RS04055
Partner locus tags
BLJ_RS04050BLJ_RS04055
Partner old locus tags
BLJ_0802BLJ_0803
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013140579.1Primary protein accession used for annex mappings.
UniProt accessionD6ZTR2Primary UniProt accession resolved in the annex database.
UniProt IDD6ZTR2_BIFLJDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLJ_RS04050Primary locus identifier stored in the genes table.
Old locus tagBLJ_0802Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014169.1Sequence record reported by the local genomic context database.
Genomic interval973 959-974 819 nt861 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span973 959-977 296 ntGCF_000092325::NC_014169.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092325::NC_014169.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014169.1All displayed genes belong to this local TCS context.
Neighborhood span973 959-977 296 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
973 959 nt977 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLJ_RS04050GCF_000092325#BLJ_RS04050
RRNarLCurrent focus
973 959-974 819 nt · Reverse (-)
BLJ_RS04055GCF_000092325#BLJ_RS04055
HKClassic
974 903-977 296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS04050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0590486
Simplified PFAM architecture for RROC_0590486
PFAM domain coverage: 183 / 286 aa (64.0%)
1 aa286 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-135] | GerE[225-280]
- Domain count: 2
- Matched identifier: RROC_0590486
- Positioned domains: Response_reg 9-135 ; Response_reg 9-135 ; GerE 225-280 ; GerE 225-280
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS04050
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 4 over 4 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 759 350 · GCF_000092325
AssemblyASM9232v1 · Complete Genomehaploid
Genome composition2 477 838 bp · 60,0% GCBifidobacterium longum subsp. longum JDM301
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key