1 Response_reg#1
9-121 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:9:4.07e-35:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECDH1_RS07765
Response regulator, unclassified
Escherichia coli DH1 · GCF_000023365
ClassRRTypeunclassifiedLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000023365#ECDH1_RS07765Stable P2CS identifier used across views.
GenomeGCF_000023365Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 GerE#2
152-208 aa · 57 aa · 26.5% of protein
Raw token
GerE:152:2.98e-25:208:57:57- Raw architecture: Response_reg:9:4.07e-35:121:113:111#GerE:152:2.98e-25:208:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000023365::NC_017625.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1585712-1586359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEcDH1_1466RefSeq proteinWP_001113639.1
Context group ID
GCF_000023365::NC_017625.1::G00014Context members
ECDH1_RS07765
Partner locus tags
ECDH1_RS07765
Partner old locus tags
EcDH1_1466
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001113639.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECDH1_RS07765Primary locus identifier stored in the genes table.
Old locus tagEcDH1_1466Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_017625.1Sequence record reported by the local genomic context database.
Genomic interval1 585 712-1 586 359 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 585 712-1 586 359 ntGCF_000023365::NC_017625.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000023365::NC_017625.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_017625.1All displayed genes belong to this local TCS context.
Neighborhood span1 585 712-1 586 359 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 585 712 nt1 586 359 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ECDH1_RS07765GCF_000023365#ECDH1_RS07765
RRunclassifiedCurrent focus
1 585 712-1 586 359 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030163035#QQK79_RS23720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1864795
Simplified PFAM architecture for RROC_1864795
PFAM domain coverage: 169 / 217 aa (77.9%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1864795
- Positioned domains: Response_reg 9-121 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_030163035#QQK79_RS23720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 056 · GCF_000023365
AssemblyASM2336v1 · Complete Genomehaploid
Genome composition4 630 707 bp · 51,0% GCEscherichia coli DH1
Signal transduction countsGenes 61 · HK 30 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key