1 Response_reg#1
9-121 aa · 113 aa · 87.6% of protein
Raw token
Response_reg:9:9.27e-38:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECD_RS09745
Response regulator, CheY family
Escherichia coli BL21(DE3) · GCF_000022665
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000022665#ECD_RS09745Stable P2CS identifier used across views.
GenomeGCF_000022665Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 129 aa (87.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:9.27e-38:121:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000022665::NC_012971.2::G00012
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span1912966-1914419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECD_01853RefSeq proteinWP_000763867.1
Context group ID
GCF_000022665::NC_012971.2::G00012Context members
ECD_RS09745ECD_RS09750
Partner locus tags
ECD_RS09745ECD_RS09750
Partner old locus tags
ECD_01853ECD_01854
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000763867.1Primary protein accession used for annex mappings.
UniProt accessionQ0T3N8Primary UniProt accession resolved in the annex database.
UniProt IDQ0T3N8_SHIF8Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECD_RS09745Primary locus identifier stored in the genes table.
Old locus tagECD_01853Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012971.2Sequence record reported by the local genomic context database.
Genomic interval1 912 966-1 913 355 nt390 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 912 966-1 914 419 ntGCF_000022665::NC_012971.2::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000022665::NC_012971.2::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012971.2All displayed genes belong to this local TCS context.
Neighborhood span1 912 966-1 914 419 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 912 966 nt1 914 419 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECD_RS09745GCF_000022665#ECD_RS09745
RRCheYCurrent focus
1 912 966-1 913 355 nt · Reverse (-)
ECD_RS09750GCF_000022665#ECD_RS09750
RRCheB
1 913 370-1 914 419 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001575615#AUQ03_RS00255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2259442
Simplified PFAM architecture for RROC_2259442
PFAM domain coverage: 112 / 142 aa (78.9%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-120]
- Domain count: 1
- Matched identifier: RROC_2259442
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120
Cluster members and taxonomy
Representative gene: GCF_001575615#AUQ03_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 469 008 · GCF_000022665
AssemblyASM2266v1 · Complete Genomehaploid
Genome composition4 558 953 bp · 51,0% GCEscherichia coli BL21(DE3)
Signal transduction countsGenes 58 · HK 28 · RR 30CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key