1 Response_reg#1
4-112 aa · 109 aa · 46.4% of protein
Raw token
Response_reg:4:4.28e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLA_RS01705
Response regulator OmpR family
Bifidobacterium animalis subsp. lactis AD011 · GCF_000021425
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000021425#BLA_RS01705Stable P2CS identifier used across views.
GenomeGCF_000021425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 235 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-229 aa · 69 aa · 29.4% of protein
Raw token
Trans_reg_C:161:4.96e-32:229:69:77- Raw architecture: Response_reg:4:4.28e-37:112:110:111#Trans_reg_C:161:4.96e-32:229:69:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000021425::NC_011835.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span424651-426578Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLA_0326RefSeq proteinWP_004268504.1
Context group ID
GCF_000021425::NC_011835.1::G00001Context members
BLA_RS01700BLA_RS01705
Partner locus tags
BLA_RS01700BLA_RS01705
Partner old locus tags
BLA_0325BLA_0326
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004268504.1Primary protein accession used for annex mappings.
UniProt accessionA0A315RV22Primary UniProt accession resolved in the annex database.
UniProt IDA0A315RV22_BIFANDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLA_RS01705Primary locus identifier stored in the genes table.
Old locus tagBLA_0326Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011835.1Sequence record reported by the local genomic context database.
Genomic interval425 871-426 578 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span424 651-426 578 ntGCF_000021425::NC_011835.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000021425::NC_011835.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011835.1All displayed genes belong to this local TCS context.
Neighborhood span424 651-426 578 nt1 928 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
424 651 nt426 578 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLA_RS01700GCF_000021425#BLA_RS01700
HKClassic
424 651-425 874 nt · Forward (+)
BLA_RS01705GCF_000021425#BLA_RS01705
RROmpRCurrent focus
425 871-426 578 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021425#BLA_RS01705The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016548
Simplified PFAM architecture for RROC_1016548
PFAM domain coverage: 180 / 235 aa (76.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[159-229]
- Domain count: 2
- Matched identifier: RROC_1016548
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 159-229 ; Trans_reg_C 159-229
Cluster members and taxonomy
Representative gene: GCF_000021425#BLA_RS01705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 442 563 · GCF_000021425
AssemblyASM2142v1 · Complete Genomehaploid
Genome composition1 933 695 bp · 60,5% GCBifidobacterium animalis subsp. lactis AD011
Signal transduction countsGenes 19 · HK 7 · RR 9CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key