1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:3.08e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCG9842_RS08425
Histidine kinase, Classic
Bacillus cereus G9842 · GCF_000021305
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000021305#BCG9842_RS08425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.000000000163:365:97:109- Raw architecture: HisKA_3:177:3.08e-19:244:68:68#HATPase_c:289:0.000000000163:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000021305::NC_011772.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1660626-1662369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCG9842_B3537RefSeq proteinWP_000397660.1
Context group ID
GCF_000021305::NC_011772.1::G00023Context members
BCG9842_RS08420BCG9842_RS08425
Partner locus tags
BCG9842_RS08420BCG9842_RS08425
Partner old locus tags
BCG9842_B3538BCG9842_B3537
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000397660.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HLR6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HLR6_BACTIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCG9842_RS08425Primary locus identifier stored in the genes table.
Old locus tagBCG9842_B3537Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011772.1Sequence record reported by the local genomic context database.
Genomic interval1 661 269-1 662 369 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 660 626-1 662 369 ntGCF_000021305::NC_011772.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000021305::NC_011772.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011772.1All displayed genes belong to this local TCS context.
Neighborhood span1 660 626-1 662 369 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 660 626 nt1 662 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCG9842_RS08420GCF_000021305#BCG9842_RS08420
RRNarL
1 660 626-1 661 264 nt · Forward (+)
BCG9842_RS08425GCF_000021305#BCG9842_RS08425
HKClassicCurrent focus
1 661 269-1 662 369 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021305#BCG9842_RS08425The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2711941
Simplified PFAM architecture for HKOC_2711941
PFAM domain coverage: 67 / 366 aa (18.3%)
1 aa366 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[177-243]
- Domain count: 1
- Matched identifier: HKOC_2711941
- Positioned domains: HisKA_3 177-243
Cluster members and taxonomy
Representative gene: GCF_000021305#BCG9842_RS08425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 405 531 · GCF_000021305
AssemblyASM2130v1 · Complete Genomehaploid
Genome composition5 736 823 bp · 35,0% GCBacillus cereus G9842
Signal transduction countsGenes 106 · HK 57 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key