1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000689:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCG9842_RS01435
Histidine kinase, Classic
Bacillus cereus G9842 · GCF_000021305
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000021305#BCG9842_RS01435Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 501 aa (47.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:0.00000000000000185:343:68:643 HATPase_c#3
390-497 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:390:1.13e-21:497:109:109- Raw architecture: HAMP:200:0.0000000000689:263:64:69#HisKA:276:0.00000000000000185:343:68:64#HATPase_c:390:1.13e-21:497:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000021305::NC_011772.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span254982-257172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCG9842_B5020RefSeq proteinWP_000719237.1
Context group ID
GCF_000021305::NC_011772.1::G00001Context members
BCG9842_RS01430BCG9842_RS01435
Partner locus tags
BCG9842_RS01430BCG9842_RS01435
Partner old locus tags
BCG9842_B5021BCG9842_B5020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000719237.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9SP85Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9SP85_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCG9842_RS01435Primary locus identifier stored in the genes table.
Old locus tagBCG9842_B5020Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011772.1Sequence record reported by the local genomic context database.
Genomic interval255 667-257 172 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span254 982-257 172 ntGCF_000021305::NC_011772.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000021305::NC_011772.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011772.1All displayed genes belong to this local TCS context.
Neighborhood span254 982-257 172 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
254 982 nt257 172 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCG9842_RS01430GCF_000021305#BCG9842_RS01430
RROmpR
254 982-255 683 nt · Forward (+)
BCG9842_RS01435GCF_000021305#BCG9842_RS01435
HKClassicCurrent focus
255 667-257 172 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021305#BCG9842_RS01435The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468167
Simplified PFAM architecture for HKOC_1468167
PFAM domain coverage: 218 / 501 aa (43.5%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-496]
- Domain count: 3
- Matched identifier: HKOC_1468167
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-496
Cluster members and taxonomy
Representative gene: GCF_000021305#BCG9842_RS01435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 405 531 · GCF_000021305
AssemblyASM2130v1 · Complete Genomehaploid
Genome composition5 736 823 bp · 35,0% GCBacillus cereus G9842
Signal transduction countsGenes 106 · HK 57 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key