1 Response_reg#1
4-112 aa · 109 aa · 44.7% of protein
Raw token
Response_reg:4:0.000000000894:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS16250
Response regulator LytTR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS16250Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 244 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-234 aa · 89 aa · 36.5% of protein
Raw token
LytTR:146:0.000000000201:234:94:98- Raw architecture: Response_reg:4:0.000000000894:112:112:111#LytTR:146:0.000000000201:234:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3400301-3401035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_3651RefSeq proteinWP_012744360.1
Context group ID
GCF_000020605::NC_012781.1::G00046Context members
EUBREC_RS16250
Partner locus tags
EUBREC_RS16250
Partner old locus tags
EUBREC_3651
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012744360.1Primary protein accession used for annex mappings.
UniProt accessionC4ZEB4Primary UniProt accession resolved in the annex database.
UniProt IDC4ZEB4_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS16250Primary locus identifier stored in the genes table.
Old locus tagEUBREC_3651Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval3 400 301-3 401 035 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 400 301-3 401 035 ntGCF_000020605::NC_012781.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span3 400 301-3 401 035 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 400 301 nt3 401 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS16250GCF_000020605#EUBREC_RS16250
RRLytTRCurrent focus
3 400 301-3 401 035 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003461185#DWX65_RS14550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0713860
Simplified PFAM architecture for RROC_0713860
PFAM domain coverage: 200 / 251 aa (79.7%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[12-121] | LytTR[153-242]
- Domain count: 2
- Matched identifier: RROC_0713860
- Positioned domains: Response_reg 12-121 ; Response_reg 12-121 ; LytTR 153-242 ; LytTR 153-242
Cluster members and taxonomy
Representative gene: GCF_003461185#DWX65_RS14550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key