1 Response_reg#1
1-113 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:1:8.19e-20:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS15695
Response regulator, unclassified
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS15695Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 530 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-473 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:431:0.000000163:473:43:423 HTH_AraC#3
485-522 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:485:0.00000000317:522:38:42- Raw architecture: Response_reg:1:8.19e-20:113:113:111#HTH_AraC:431:0.000000163:473:43:42#HTH_AraC:485:0.00000000317:522:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3292651-3296059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_3522RefSeq proteinWP_306718536.1
Context group ID
GCF_000020605::NC_012781.1::G00044Context members
EUBREC_RS15690EUBREC_RS15695
Partner locus tags
EUBREC_RS15690EUBREC_RS15695
Partner old locus tags
EUBREC_3521EUBREC_3522
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306718536.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS15695Primary locus identifier stored in the genes table.
Old locus tagEUBREC_3522Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval3 294 467-3 296 059 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 292 651-3 296 059 ntGCF_000020605::NC_012781.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span3 292 651-3 296 059 nt3 409 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 292 651 nt3 296 059 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS15690GCF_000020605#EUBREC_RS15690
HKClassic
3 292 651-3 294 480 nt · Forward (+)
EUBREC_RS15695GCF_000020605#EUBREC_RS15695
RRunclassifiedCurrent focus
3 294 467-3 296 059 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299675#G4367_RS09810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101367
Simplified PFAM architecture for RROC_0101367
PFAM domain coverage: 192 / 535 aa (35.9%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[450-528]
- Domain count: 2
- Matched identifier: RROC_0101367
- Positioned domains: Response_reg 5-117 ; HTH_18 450-528
Cluster members and taxonomy
Representative gene: GCF_013299675#G4367_RS09810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key