1 Response_reg#1
5-110 aa · 106 aa · 44.0% of protein
Raw token
Response_reg:5:4.89e-16:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS14390
Response regulator LytTR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS14390Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 241 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-232 aa · 90 aa · 37.3% of protein
Raw token
LytTR:143:1.15e-17:232:95:98- Raw architecture: Response_reg:5:4.89e-16:110:108:111#LytTR:143:1.15e-17:232:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3052473-3053198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_3210RefSeq proteinWP_012743964.1
Context group ID
GCF_000020605::NC_012781.1::G00039Context members
EUBREC_RS14390
Partner locus tags
EUBREC_RS14390
Partner old locus tags
EUBREC_3210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743964.1Primary protein accession used for annex mappings.
UniProt accessionC4ZDG1Primary UniProt accession resolved in the annex database.
UniProt IDC4ZDG1_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS14390Primary locus identifier stored in the genes table.
Old locus tagEUBREC_3210Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval3 052 473-3 053 198 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 052 473-3 053 198 ntGCF_000020605::NC_012781.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span3 052 473-3 053 198 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 052 473 nt3 053 198 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS14390GCF_000020605#EUBREC_RS14390
RRLytTRCurrent focus
3 052 473-3 053 198 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS14390The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862669
Simplified PFAM architecture for RROC_0862669
PFAM domain coverage: 201 / 241 aa (83.4%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[143-232]
- Domain count: 2
- Matched identifier: RROC_0862669
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 143-232 ; LytTR 143-232
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS14390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key