1 Response_reg#1
10-124 aa · 115 aa · 44.7% of protein
Raw token
Response_reg:10:1.06e-20:124:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS14005
Response regulator LytTR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeLytTRLength257 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS14005Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 257 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 LytTR#2
153-240 aa · 88 aa · 34.2% of protein
Raw token
LytTR:153:0.00000000000000345:240:93:98- Raw architecture: Response_reg:10:1.06e-20:124:117:111#LytTR:153:0.00000000000000345:240:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2975696-2976469Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_3120RefSeq proteinWP_012743875.1
Context group ID
GCF_000020605::NC_012781.1::G00038Context members
EUBREC_RS14005
Partner locus tags
EUBREC_RS14005
Partner old locus tags
EUBREC_3120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743875.1Primary protein accession used for annex mappings.
UniProt accessionC4Z8M1Primary UniProt accession resolved in the annex database.
UniProt IDC4Z8M1_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS14005Primary locus identifier stored in the genes table.
Old locus tagEUBREC_3120Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval2 975 696-2 976 469 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 975 696-2 976 469 ntGCF_000020605::NC_012781.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span2 975 696-2 976 469 nt774 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 975 696 nt2 976 469 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS14005GCF_000020605#EUBREC_RS14005
RRLytTRCurrent focus
2 975 696-2 976 469 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS14005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0667081
Simplified PFAM architecture for RROC_0667081
PFAM domain coverage: 202 / 257 aa (78.6%)
1 aa257 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-123] | LytTR[153-240]
- Domain count: 2
- Matched identifier: RROC_0667081
- Positioned domains: Response_reg 10-123 ; Response_reg 10-123 ; LytTR 153-240 ; LytTR 153-240
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS14005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key