1 Response_reg#1
8-112 aa · 105 aa · 42.9% of protein
Raw token
Response_reg:8:0.0000000000624:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS13785
Response regulator LytTR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS13785Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 245 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-231 aa · 90 aa · 36.7% of protein
Raw token
LytTR:142:1.91e-17:231:95:98- Raw architecture: Response_reg:8:0.0000000000624:112:109:111#LytTR:142:1.91e-17:231:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2933135-2933872Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_3070RefSeq proteinWP_012743825.1
Context group ID
GCF_000020605::NC_012781.1::G00036Context members
EUBREC_RS13785
Partner locus tags
EUBREC_RS13785
Partner old locus tags
EUBREC_3070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743825.1Primary protein accession used for annex mappings.
UniProt accessionC4Z8H1Primary UniProt accession resolved in the annex database.
UniProt IDC4Z8H1_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS13785Primary locus identifier stored in the genes table.
Old locus tagEUBREC_3070Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval2 933 135-2 933 872 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 933 135-2 933 872 ntGCF_000020605::NC_012781.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span2 933 135-2 933 872 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 933 135 nt2 933 872 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS13785GCF_000020605#EUBREC_RS13785
RRLytTRCurrent focus
2 933 135-2 933 872 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS13785The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789379
Simplified PFAM architecture for RROC_0789379
PFAM domain coverage: 201 / 245 aa (82.0%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[8-118] | LytTR[142-231]
- Domain count: 2
- Matched identifier: RROC_0789379
- Positioned domains: Response_reg 8-118 ; Response_reg 8-118 ; LytTR 142-231 ; LytTR 142-231
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS13785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key