1 Response_reg#1
3-104 aa · 102 aa · 30.4% of protein
Raw token
Response_reg:3:7.4e-28:104:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS12980
Response regulator, unclassified
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeunclassifiedLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS12980Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage173 / 336 aa (51.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
239-277 aa · 39 aa · 11.6% of protein
Raw token
HTH_AraC:239:0.000000433:277:39:423 HTH_AraC#3
296-327 aa · 32 aa · 9.5% of protein
Raw token
HTH_AraC:296:0.00000227:327:32:42- Raw architecture: Response_reg:3:7.4e-28:104:102:111#HTH_AraC:239:0.000000433:277:39:42#HTH_AraC:296:0.00000227:327:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2766330-2768488Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_2887RefSeq proteinWP_012743643.1
Context group ID
GCF_000020605::NC_012781.1::G00032Context members
EUBREC_RS12980EUBREC_RS12985
Partner locus tags
EUBREC_RS12980EUBREC_RS12985
Partner old locus tags
EUBREC_2887EUBREC_2888
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743643.1Primary protein accession used for annex mappings.
UniProt accessionC4ZHX9Primary UniProt accession resolved in the annex database.
UniProt IDC4ZHX9_AGARVDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS12980Primary locus identifier stored in the genes table.
Old locus tagEUBREC_2887Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval2 766 330-2 767 340 nt1 011 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 766 330-2 768 488 ntGCF_000020605::NC_012781.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span2 766 330-2 768 488 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 766 330 nt2 768 488 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS12980GCF_000020605#EUBREC_RS12980
RRunclassifiedCurrent focus
2 766 330-2 767 340 nt · Reverse (-)
EUBREC_RS12985GCF_000020605#EUBREC_RS12985
HKClassic
2 767 337-2 768 488 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS12980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0508695
Simplified PFAM architecture for RROC_0508695
PFAM domain coverage: 180 / 336 aa (53.6%)
1 aa336 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[252-328]
- Domain count: 2
- Matched identifier: RROC_0508695
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; HTH_18 252-328 ; HTH_18 252-328
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS12980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key