1 HAMP#1
289-358 aa · 70 aa · 11.9% of protein
Raw token
HAMP:289:0.000000882:358:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS04665
Histidine kinase, Classic
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS04665Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 588 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa588 aa
Domain-by-domain annotation3 items
2 His_kinase#2
380-459 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:380:2.78e-31:459:80:803 HATPase_c#3
479-586 aa · 108 aa · 18.4% of protein
Raw token
HATPase_c:479:0.000000000331:586:108:109- Raw architecture: HAMP:289:0.000000882:358:70:69#His_kinase:380:2.78e-31:459:80:80#HATPase_c:479:0.000000000331:586:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span944239-947611Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_1045RefSeq proteinWP_012741908.1
Context group ID
GCF_000020605::NC_012781.1::G00013Context members
EUBREC_RS04665EUBREC_RS04670
Partner locus tags
EUBREC_RS04665EUBREC_RS04670
Partner old locus tags
EUBREC_1045EUBREC_1046
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741908.1Primary protein accession used for annex mappings.
UniProt accessionC4ZGL0Primary UniProt accession resolved in the annex database.
UniProt IDC4ZGL0_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS04665Primary locus identifier stored in the genes table.
Old locus tagEUBREC_1045Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval944 239-946 005 nt1 767 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span944 239-947 611 ntGCF_000020605::NC_012781.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span944 239-947 611 nt3 373 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
944 239 nt947 611 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS04665GCF_000020605#EUBREC_RS04665
HKClassicCurrent focus
944 239-946 005 nt · Forward (+)
EUBREC_RS04670GCF_000020605#EUBREC_RS04670
RRunclassified
946 016-947 611 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS04665The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1119939
Simplified PFAM architecture for HKOC_1119939
PFAM domain coverage: 187 / 588 aa (31.8%)
1 aa588 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[380-459] | HATPase_c[479-585]
- Domain count: 2
- Matched identifier: HKOC_1119939
- Positioned domains: His_kinase 380-459 ; HATPase_c 479-585
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS04665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key