1 HAMP#1
175-242 aa · 68 aa · 14.7% of protein
Raw token
HAMP:175:0.000000000000541:242:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS04265
Histidine kinase, Classic
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS04265Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 464 aa (48.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-307 aa · 54 aa · 11.6% of protein
Raw token
HisKA:254:0.0000000358:307:54:643 HATPase_c#3
357-457 aa · 101 aa · 21.8% of protein
Raw token
HATPase_c:357:3.55e-27:457:106:109- Raw architecture: HAMP:175:0.000000000000541:242:68:69#HisKA:254:0.0000000358:307:54:64#HATPase_c:357:3.55e-27:457:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span856904-858951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0959RefSeq proteinWP_012741825.1
Context group ID
GCF_000020605::NC_012781.1::G00010Context members
EUBREC_RS04260EUBREC_RS04265
Partner locus tags
EUBREC_RS04260EUBREC_RS04265
Partner old locus tags
EUBREC_0958EUBREC_0959
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741825.1Primary protein accession used for annex mappings.
UniProt accessionC4ZFY9Primary UniProt accession resolved in the annex database.
UniProt IDC4ZFY9_AGARVDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS04265Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0959Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval857 557-858 951 nt1 395 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span856 904-858 951 ntGCF_000020605::NC_012781.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span856 904-858 951 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
856 904 nt858 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS04260GCF_000020605#EUBREC_RS04260
RROmpR
856 904-857 560 nt · Forward (+)
EUBREC_RS04265GCF_000020605#EUBREC_RS04265
HKClassicCurrent focus
857 557-858 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS04265The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783679
Simplified PFAM architecture for HKOC_1783679
PFAM domain coverage: 208 / 464 aa (44.8%)
1 aa464 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-242] | HisKA[254-310] | HATPase_c[357-457]
- Domain count: 3
- Matched identifier: HKOC_1783679
- Positioned domains: HAMP 193-242 ; HisKA 254-310 ; HATPase_c 357-457
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS04265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key