1 Response_reg#1
4-113 aa · 110 aa · 50.5% of protein
Raw token
Response_reg:4:5.14e-21:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS04260
Response regulator OmpR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS04260Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 218 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-214 aa · 70 aa · 32.1% of protein
Raw token
Trans_reg_C:145:1.07e-24:214:76:77- Raw architecture: Response_reg:4:5.14e-21:113:112:111#Trans_reg_C:145:1.07e-24:214:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span856904-858951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0958RefSeq proteinWP_012741824.1
Context group ID
GCF_000020605::NC_012781.1::G00010Context members
EUBREC_RS04260EUBREC_RS04265
Partner locus tags
EUBREC_RS04260EUBREC_RS04265
Partner old locus tags
EUBREC_0958EUBREC_0959
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741824.1Primary protein accession used for annex mappings.
UniProt accessionC4ZFY8Primary UniProt accession resolved in the annex database.
UniProt IDC4ZFY8_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS04260Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0958Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval856 904-857 560 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span856 904-858 951 ntGCF_000020605::NC_012781.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span856 904-858 951 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
856 904 nt858 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS04260GCF_000020605#EUBREC_RS04260
RROmpRCurrent focus
856 904-857 560 nt · Forward (+)
EUBREC_RS04265GCF_000020605#EUBREC_RS04265
HKClassic
857 557-858 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS04260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812091
Simplified PFAM architecture for RROC_1812091
PFAM domain coverage: 179 / 218 aa (82.1%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-214]
- Domain count: 2
- Matched identifier: RROC_1812091
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-214 ; Trans_reg_C 145-214
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS04260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key