1 Response_reg#1
3-104 aa · 102 aa · 44.3% of protein
Raw token
Response_reg:3:0.00000000000000835:104:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS04175
Response regulator LytTR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS04175Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 230 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
132-222 aa · 91 aa · 39.6% of protein
Raw token
LytTR:132:2.82e-17:222:96:98- Raw architecture: Response_reg:3:0.00000000000000835:104:105:111#LytTR:132:2.82e-17:222:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span841152-841844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0937RefSeq proteinWP_012741803.1
Context group ID
GCF_000020605::NC_012781.1::G00009Context members
EUBREC_RS04175
Partner locus tags
EUBREC_RS04175
Partner old locus tags
EUBREC_0937
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741803.1Primary protein accession used for annex mappings.
UniProt accessionC4ZFW7Primary UniProt accession resolved in the annex database.
UniProt IDC4ZFW7_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS04175Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0937Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval841 152-841 844 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span841 152-841 844 ntGCF_000020605::NC_012781.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span841 152-841 844 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
841 152 nt841 844 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS04175GCF_000020605#EUBREC_RS04175
RRLytTRCurrent focus
841 152-841 844 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS04175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199874
Simplified PFAM architecture for RROC_1199874
PFAM domain coverage: 195 / 230 aa (84.8%)
1 aa230 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-107] | LytTR[132-221]
- Domain count: 2
- Matched identifier: RROC_1199874
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; LytTR 132-221 ; LytTR 132-221
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS04175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key