1 HAMP#1
194-261 aa · 68 aa · 13.2% of protein
Raw token
HAMP:194:0.00000000000000323:261:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS04120
Histidine kinase, Classic
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassHKTypeClassicLength515 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS04120Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 515 aa (51.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation3 items
2 HisKA#2
272-332 aa · 61 aa · 11.8% of protein
Raw token
HisKA:272:0.0000000000445:332:61:643 HATPase_c#3
381-514 aa · 134 aa · 26.0% of protein
Raw token
HATPase_c:381:2.25e-19:514:134:109- Raw architecture: HAMP:194:0.00000000000000323:261:68:69#HisKA:272:0.0000000000445:332:61:64#HATPase_c:381:2.25e-19:514:134:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span824740-826994Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0925RefSeq proteinWP_012741791.1
Context group ID
GCF_000020605::NC_012781.1::G00008Context members
EUBREC_RS04115EUBREC_RS04120
Partner locus tags
EUBREC_RS04115EUBREC_RS04120
Partner old locus tags
EUBREC_0924EUBREC_0925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741791.1Primary protein accession used for annex mappings.
UniProt accessionC4ZFV5Primary UniProt accession resolved in the annex database.
UniProt IDC4ZFV5_AGARVDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS04120Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0925Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval825 447-826 994 nt1 548 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span824 740-826 994 ntGCF_000020605::NC_012781.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span824 740-826 994 nt2 255 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
824 740 nt826 994 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS04115GCF_000020605#EUBREC_RS04115
RROmpR
824 740-825 393 nt · Forward (+)
EUBREC_RS04120GCF_000020605#EUBREC_RS04120
HKClassicCurrent focus
825 447-826 994 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS04120The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1407480
Simplified PFAM architecture for HKOC_1407480
PFAM domain coverage: 242 / 515 aa (47.0%)
1 aa515 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[209-259] | HisKA[273-331] | HATPase_c[383-514]
- Domain count: 3
- Matched identifier: HKOC_1407480
- Positioned domains: HAMP 209-259 ; HisKA 273-331 ; HATPase_c 383-514
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS04120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key