1 HisKA#1
189-254 aa · 66 aa · 16.1% of protein
Raw token
HisKA:189:0.00000000157:254:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS03430
Histidine kinase, Classic
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS03430Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 409 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-405 aa · 100 aa · 24.4% of protein
Raw token
HATPase_c:306:6.05e-25:405:100:109- Raw architecture: HisKA:189:0.00000000157:254:66:64#HATPase_c:306:6.05e-25:405:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span704319-706243Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0765RefSeq proteinWP_041253889.1
Context group ID
GCF_000020605::NC_012781.1::G00007Context members
EUBREC_RS03430EUBREC_RS03435
Partner locus tags
EUBREC_RS03430EUBREC_RS03435
Partner old locus tags
EUBREC_0765EUBREC_0766
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041253889.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS03430Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0765Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval704 319-705 548 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span704 319-706 243 ntGCF_000020605::NC_012781.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span704 319-706 243 nt1 925 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
704 319 nt706 243 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS03430GCF_000020605#EUBREC_RS03430
HKClassicCurrent focus
704 319-705 548 nt · Reverse (-)
EUBREC_RS03435GCF_000020605#EUBREC_RS03435
RROmpR
705 545-706 243 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS03430The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2362742
Simplified PFAM architecture for HKOC_2362742
PFAM domain coverage: 165 / 409 aa (40.3%)
1 aa409 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-254] | HATPase_c[305-405]
- Domain count: 2
- Matched identifier: HKOC_2362742
- Positioned domains: HisKA 191-254 ; HATPase_c 305-405
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS03430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key