1 HAMP#1
183-253 aa · 71 aa · 14.2% of protein
Raw token
HAMP:183:0.00000000000000482:253:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS02115
Histidine kinase, Classic
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000020605#EUBREC_RS02115Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 499 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
268-331 aa · 64 aa · 12.8% of protein
Raw token
HisKA:268:0.000000000000014:331:64:643 HATPase_c#3
378-491 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:378:4.48e-32:491:114:109- Raw architecture: HAMP:183:0.00000000000000482:253:71:69#HisKA:268:0.000000000000014:331:64:64#HATPase_c:378:4.48e-32:491:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000020605::NC_012781.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span421608-423920Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0465RefSeq proteinWP_041253828.1
Context group ID
GCF_000020605::NC_012781.1::G00005Context members
EUBREC_RS02110EUBREC_RS02115
Partner locus tags
EUBREC_RS02110EUBREC_RS02115
Partner old locus tags
EUBREC_0464EUBREC_0465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_041253828.1Primary protein accession used for annex mappings.
UniProt accessionA0A413DJ14Primary UniProt accession resolved in the annex database.
UniProt IDA0A413DJ14_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS02115Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0465Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval422 421-423 920 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span421 608-423 920 ntGCF_000020605::NC_012781.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span421 608-423 920 nt2 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
421 608 nt423 920 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBREC_RS02110GCF_000020605#EUBREC_RS02110
RROmpR
421 608-422 297 nt · Forward (+)
EUBREC_RS02115GCF_000020605#EUBREC_RS02115
HKClassicCurrent focus
422 421-423 920 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS02115The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1481038
Simplified PFAM architecture for HKOC_1481038
PFAM domain coverage: 228 / 499 aa (45.7%)
1 aa499 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[266-330] | HATPase_c[379-488]
- Domain count: 3
- Matched identifier: HKOC_1481038
- Positioned domains: HAMP 200-252 ; HisKA 266-330 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS02115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key