1 Response_reg#1
40-113 aa · 74 aa · 31.6% of protein
Raw token
Response_reg:40:0.0000000000312:113:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBREC_RS00940
Response regulator LytTR family
Agathobacter rectalis ATCC 33656 · GCF_000020605
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000020605#EUBREC_RS00940Stable P2CS identifier used across views.
GenomeGCF_000020605Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 234 aa (69.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-229 aa · 89 aa · 38.0% of protein
Raw token
LytTR:141:2.52e-23:229:95:98- Raw architecture: Response_reg:40:0.0000000000312:113:77:111#LytTR:141:2.52e-23:229:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000020605::NC_012781.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span194357-195061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBREC_0208RefSeq proteinWP_012741133.1
Context group ID
GCF_000020605::NC_012781.1::G00003Context members
EUBREC_RS00940
Partner locus tags
EUBREC_RS00940
Partner old locus tags
EUBREC_0208
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741133.1Primary protein accession used for annex mappings.
UniProt accessionC4ZAF1Primary UniProt accession resolved in the annex database.
UniProt IDC4ZAF1_AGARVDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBREC_RS00940Primary locus identifier stored in the genes table.
Old locus tagEUBREC_0208Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_012781.1Sequence record reported by the local genomic context database.
Genomic interval194 357-195 061 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span194 357-195 061 ntGCF_000020605::NC_012781.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000020605::NC_012781.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_012781.1All displayed genes belong to this local TCS context.
Neighborhood span194 357-195 061 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 357 nt195 061 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EUBREC_RS00940GCF_000020605#EUBREC_RS00940
RRLytTRCurrent focus
194 357-195 061 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS00940The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047223
Simplified PFAM architecture for RROC_1047223
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[21-117] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_1047223
- Positioned domains: Response_reg 21-117 ; Response_reg 21-117 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS00940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 515 619 · GCF_000020605
AssemblyASM2060v1 · Complete Genomehaploid
Genome composition3 449 685 bp · 41,5% GCAgathobacter rectalis ATCC 33656
Signal transduction countsGenes 86 · HK 39 · RR 46CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key