1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.000000000474:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS26915
Histidine kinase, Classic
Bacillus mycoides KBAB4 · GCF_000018825
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000018825#BCERKBAB4_RS26915Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 359 aa (69.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-185 aa · 66 aa · 18.4% of protein
Raw token
HisKA:120:1.4e-17:185:66:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:1.77e-26:348:111:109- Raw architecture: HAMP:39:0.000000000474:109:71:69#HisKA:120:1.4e-17:185:66:64#HATPase_c:238:1.77e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000018825::NC_010180.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113459-115245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_5512RefSeq proteinWP_002144165.1
Context group ID
GCF_000018825::NC_010180.1::G00068Context members
BCERKBAB4_RS26910BCERKBAB4_RS26915
Partner locus tags
BCERKBAB4_RS26910BCERKBAB4_RS26915
Partner old locus tags
BcerKBAB4_5511BcerKBAB4_5512
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002144165.1Primary protein accession used for annex mappings.
UniProt accessionA9VV66Primary UniProt accession resolved in the annex database.
UniProt IDA9VV66_BACMKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS26915Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_5512Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010180.1Sequence record reported by the local genomic context database.
Genomic interval114 166-115 245 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 459-115 245 ntGCF_000018825::NC_010180.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010180.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010180.1All displayed genes belong to this local TCS context.
Neighborhood span113 459-115 245 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 459 nt115 245 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERKBAB4_RS26910GCF_000018825#BCERKBAB4_RS26910
RROmpR
113 459-114 169 nt · Forward (+)
BCERKBAB4_RS26915GCF_000018825#BCERKBAB4_RS26915
HKClassicCurrent focus
114 166-115 245 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS26915The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2752997
Simplified PFAM architecture for HKOC_2752997
PFAM domain coverage: 231 / 359 aa (64.3%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[120-185] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2752997
- Positioned domains: HAMP 56-109 ; HisKA 120-185 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS26915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key