1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000471:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERKBAB4_RS01890
Histidine kinase, Classic
Bacillus mycoides KBAB4 · GCF_000018825
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000018825#BCERKBAB4_RS01890Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage390 / 672 aa (58.0%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 PAS_9#2
347-441 aa · 95 aa · 14.1% of protein
Raw token
PAS_9:347:0.00000362:441:107:1023 HisKA#3
459-514 aa · 56 aa · 8.3% of protein
Raw token
HisKA:459:0.0000000000000151:514:56:644 HATPase_c#4
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:2.63e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000471:163:143:133#PAS_9:347:0.00000362:441:107:102#HisKA:459:0.0000000000000151:514:56:64#HATPase_c:568:2.63e-19:665:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000018825::NC_010184.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span362737-364755Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBcerKBAB4_0315RefSeq proteinWP_012260239.1
Context group ID
GCF_000018825::NC_010184.1::G00003Context members
BCERKBAB4_RS01890
Partner locus tags
BCERKBAB4_RS01890
Partner old locus tags
BcerKBAB4_0315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012260239.1Primary protein accession used for annex mappings.
UniProt accessionA0A653VIY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A653VIY8_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERKBAB4_RS01890Primary locus identifier stored in the genes table.
Old locus tagBcerKBAB4_0315Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_010184.1Sequence record reported by the local genomic context database.
Genomic interval362 737-364 755 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span362 737-364 755 ntGCF_000018825::NC_010184.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000018825::NC_010184.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_010184.1All displayed genes belong to this local TCS context.
Neighborhood span362 737-364 755 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
362 737 nt364 755 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERKBAB4_RS01890GCF_000018825#BCERKBAB4_RS01890
HKClassicCurrent focus
362 737-364 755 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS01890The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0838875
Simplified PFAM architecture for HKOC_0838875
PFAM domain coverage: 299 / 672 aa (44.5%)
1 aa672 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[459-515] | HATPase_c[565-666]
- Domain count: 3
- Matched identifier: HKOC_0838875
- Positioned domains: GAF 24-163 ; HisKA 459-515 ; HATPase_c 565-666
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS01890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 315 730 · GCF_000018825
AssemblyASM1882v1 · Complete Genomehaploid
Genome composition5 872 743 bp · 35,5% GCBacillus mycoides KBAB4
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key