1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:5.99e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BALH_RS16030
Response regulator OmpR family
Bacillus thuringiensis str. Al Hakam · GCF_000015065
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000015065#BALH_RS16030Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:8.14e-33:229:77:77- Raw architecture: Response_reg:5:5.99e-36:114:111:111#Trans_reg_C:153:8.14e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000015065::NC_008600.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3094509-3096348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBALH_2920RefSeq proteinWP_001281104.1
Context group ID
GCF_000015065::NC_008600.1::G00043Context members
BALH_RS16025BALH_RS16030
Partner locus tags
BALH_RS16025BALH_RS16030
Partner old locus tags
BALH_2919BALH_2920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001281104.1Primary protein accession used for annex mappings.
UniProt accessionA0A6H0TGL8Primary UniProt accession resolved in the annex database.
UniProt IDA0A6H0TGL8_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBALH_RS16030Primary locus identifier stored in the genes table.
Old locus tagBALH_2920Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008600.1Sequence record reported by the local genomic context database.
Genomic interval3 095 653-3 096 348 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 094 509-3 096 348 ntGCF_000015065::NC_008600.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000015065::NC_008600.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008600.1All displayed genes belong to this local TCS context.
Neighborhood span3 094 509-3 096 348 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 094 509 nt3 096 348 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BALH_RS16025GCF_000015065#BALH_RS16025
HKClassic
3 094 509-3 095 663 nt · Reverse (-)
BALH_RS16030GCF_000015065#BALH_RS16030
RROmpRCurrent focus
3 095 653-3 096 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000015065#BALH_RS16030The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1157832
Simplified PFAM architecture for RROC_1157832
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1157832
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000015065#BALH_RS16030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 412 694 · GCF_000015065
AssemblyASM1506v1 · Complete Genomehaploid
Genome composition5 313 030 bp · 35,5% GCBacillus thuringiensis str. Al Hakam
Signal transduction countsGenes 110 · HK 58 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key