1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:2.12e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FTN_RS08800
Response regulator OmpR family
Francisella tularensis subsp. novicida U112 · GCF_000014645
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000014645#FTN_RS08800Stable P2CS identifier used across views.
GenomeGCF_000014645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:1.75e-21:224:77:77- Raw architecture: Response_reg:5:2.12e-29:114:111:111#Trans_reg_C:149:1.75e-21:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000014645::NC_008601.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1837873-1841282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFTN_1714RefSeq proteinWP_003041395.1
Context group ID
GCF_000014645::NC_008601.1::G00004Context members
FTN_RS08800FTN_RS08805
Partner locus tags
FTN_RS08800FTN_RS08805
Partner old locus tags
FTN_1714FTN_1715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003041395.1Primary protein accession used for annex mappings.
UniProt accessionA0Q8K6Primary UniProt accession resolved in the annex database.
UniProt IDA0Q8K6_FRATNDisplay identifier provided by UniProt.
GO / PubMed6 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFTN_RS08800Primary locus identifier stored in the genes table.
Old locus tagFTN_1714Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_008601.1Sequence record reported by the local genomic context database.
Genomic interval1 837 873-1 838 559 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 837 873-1 841 282 ntGCF_000014645::NC_008601.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000014645::NC_008601.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_008601.1All displayed genes belong to this local TCS context.
Neighborhood span1 837 873-1 841 282 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 837 873 nt1 841 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FTN_RS08800GCF_000014645#FTN_RS08800
RROmpRCurrent focus
1 837 873-1 838 559 nt · Reverse (-)
FTN_RS08805GCF_000014645#FTN_RS08805
HKClassic
1 838 601-1 841 282 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000014645#FTN_RS08800The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301666
Simplified PFAM architecture for RROC_1301666
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1301666
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-224 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_000014645#FTN_RS08800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 401 614 · GCF_000014645
AssemblyASM1464v1 · Complete Genomehaploid
Genome composition1 910 031 bp · 32,5% GCFrancisella tularensis subsp. novicida U112
Signal transduction countsGenes 6 · HK 3 · RR 3CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key