1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:5.25e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECSE_RS03920
Response regulator OmpR family
Escherichia coli SE11 · GCF_000010385
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000010385#ECSE_RS03920Stable P2CS identifier used across views.
GenomeGCF_000010385Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:148:7.52e-27:223:76:77- Raw architecture: Response_reg:4:5.25e-39:113:111:111#Trans_reg_C:148:7.52e-27:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000010385::NC_011415.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span804893-808251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECSE_0754RefSeq proteinWP_000186103.1
Context group ID
GCF_000010385::NC_011415.1::G00005Context members
ECSE_RS03920ECSE_RS03925
Partner locus tags
ECSE_RS03920ECSE_RS03925
Partner old locus tags
ECSE_0754ECSE_0755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000186103.1Primary protein accession used for annex mappings.
UniProt accessionE0J1P2Primary UniProt accession resolved in the annex database.
UniProt IDE0J1P2_ECOLWDisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECSE_RS03920Primary locus identifier stored in the genes table.
Old locus tagECSE_0754Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011415.1Sequence record reported by the local genomic context database.
Genomic interval804 893-805 570 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span804 893-808 251 ntGCF_000010385::NC_011415.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000010385::NC_011415.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011415.1All displayed genes belong to this local TCS context.
Neighborhood span804 893-808 251 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
804 893 nt808 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECSE_RS03920GCF_000010385#ECSE_RS03920
RROmpRCurrent focus
804 893-805 570 nt · Reverse (-)
ECSE_RS03925GCF_000010385#ECSE_RS03925
HKClassic
805 567-808 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033843485#J5I77_RS17590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1144905
Simplified PFAM architecture for RROC_1144905
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1144905
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_033843485#J5I77_RS17590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 409 438 · GCF_000010385
AssemblyASM1038v1 · Complete Genomehaploid
Genome composition5 155 626 bp · 50,5% GCEscherichia coli SE11
Signal transduction countsGenes 61 · HK 30 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key