1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:5.76e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD630_RS17050
Response regulator OmpR family
Clostridioides difficile 630 · GCF_000009205
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000009205#CD630_RS17050Stable P2CS identifier used across views.
GenomeGCF_000009205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:7.39e-31:219:77:77- Raw architecture: Response_reg:4:5.76e-34:113:111:111#Trans_reg_C:146:7.39e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000009205::NC_009089.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3748555-3750353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCD630_32030RefSeq proteinWP_003434299.1
Context group ID
GCF_000009205::NC_009089.1::G00053Context members
CD630_RS17045CD630_RS17050
Partner locus tags
CD630_RS17045CD630_RS17050
Partner old locus tags
CD630_32020CD630_32030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434299.1Primary protein accession used for annex mappings.
UniProt accessionQ17ZU7Primary UniProt accession resolved in the annex database.
UniProt IDQ17ZU7_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD630_RS17050Primary locus identifier stored in the genes table.
Old locus tagCD630_32030Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_009089.1Sequence record reported by the local genomic context database.
Genomic interval3 749 682-3 750 353 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 748 555-3 750 353 ntGCF_000009205::NC_009089.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000009205::NC_009089.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_009089.1All displayed genes belong to this local TCS context.
Neighborhood span3 748 555-3 750 353 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 748 555 nt3 750 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CD630_RS17045GCF_000009205#CD630_RS17045
HKClassic
3 748 555-3 749 685 nt · Reverse (-)
CD630_RS17050GCF_000009205#CD630_RS17050
RROmpRCurrent focus
3 749 682-3 750 353 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586849
Simplified PFAM architecture for RROC_1586849
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1586849
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 272 563 · GCF_000009205
AssemblyASM920v2 · Complete Genomehaploid
Genome composition4 298 133 bp · 29,0% GCClostridioides difficile 630
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key