1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.89e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BT9727_RS23705
Response regulator OmpR family
[Bacillus thuringiensis] serovar konkukian str. 97-27 · GCF_000008505
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000008505#BT9727_RS23705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:1.12e-29:225:76:77- Raw architecture: Response_reg:5:1.89e-35:114:111:111#Trans_reg_C:153:1.12e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000008505::NC_005957.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4591343-4593882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBT9727_4546RefSeq proteinWP_001097096.1
Context group ID
GCF_000008505::NC_005957.1::G00052Context members
BT9727_RS23700BT9727_RS23705
Partner locus tags
BT9727_RS23700BT9727_RS23705
Partner old locus tags
BT9727_4545BT9727_4546
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001097096.1Primary protein accession used for annex mappings.
UniProt accessionQ6HC68Primary UniProt accession resolved in the annex database.
UniProt IDQ6HC68_BACHKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBT9727_RS23705Primary locus identifier stored in the genes table.
Old locus tagBT9727_4546Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_005957.1Sequence record reported by the local genomic context database.
Genomic interval4 593 193-4 593 882 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 591 343-4 593 882 ntGCF_000008505::NC_005957.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000008505::NC_005957.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_005957.1All displayed genes belong to this local TCS context.
Neighborhood span4 591 343-4 593 882 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 591 343 nt4 593 882 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BT9727_RS23700GCF_000008505#BT9727_RS23700
HKClassic
4 591 343-4 593 196 nt · Reverse (-)
BT9727_RS23705GCF_000008505#BT9727_RS23705
RROmpRCurrent focus
4 593 193-4 593 882 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS23705The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246149
Simplified PFAM architecture for RROC_1246149
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1246149
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS23705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 281 309 · GCF_000008505
AssemblyASM850v1 · Complete Genomehaploid
Genome composition5 314 794 bp · 35,5% GC[Bacillus thuringiensis] serovar konkukian str. 97-27
Signal transduction countsGenes 109 · HK 58 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key