1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.000000000117:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BA_RS03120
Histidine kinase, Classic
Bacillus anthracis str. Ames · GCF_000007845
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007845#BA_RS03120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 487 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000608:330:66:643 HATPase_c#3
377-487 aa · 111 aa · 22.8% of protein
Raw token
HATPase_c:377:3.77e-32:487:111:109- Raw architecture: HAMP:192:0.000000000117:259:70:69#HisKA:265:0.0000000000000608:330:66:64#HATPase_c:377:3.77e-32:487:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007845::NC_003997.3::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span593759-595959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBA0584%2CBA_0584RefSeq proteinWP_000041003.1
Context group ID
GCF_000007845::NC_003997.3::G00005Context members
BA_RS03120BA_RS03125
Partner locus tags
BA_RS03120BA_RS03125
Partner old locus tags
BA0584%2CBA_0584BA0585%2CBA_0585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000041003.1Primary protein accession used for annex mappings.
UniProt accessionA0AAC8NEB2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAC8NEB2_BACANDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBA_RS03120Primary locus identifier stored in the genes table.
Old locus tagBA0584%2CBA_0584Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_003997.3Sequence record reported by the local genomic context database.
Genomic interval593 759-595 222 nt1 464 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span593 759-595 959 ntGCF_000007845::NC_003997.3::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007845::NC_003997.3::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_003997.3All displayed genes belong to this local TCS context.
Neighborhood span593 759-595 959 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
593 759 nt595 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BA_RS03120GCF_000007845#BA_RS03120
HKClassicCurrent focus
593 759-595 222 nt · Reverse (-)
BA_RS03125GCF_000007845#BA_RS03125
RROmpR
595 288-595 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS03120The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1559456
Simplified PFAM architecture for HKOC_1559456
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1559456
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS03120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 198 094 · GCF_000007845
AssemblyASM784v1 · Complete Genomehaploid
Genome composition5 227 293 bp · 35,5% GCBacillus anthracis str. Ames
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key