1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:8.65e-18:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BC_RS12705
Response regulator OmpR family
Bacillus cereus ATCC 14579 · GCF_000007825
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007825#BC_RS12705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:150:9.41e-23:225:77:77- Raw architecture: Response_reg:4:8.65e-18:113:111:111#Trans_reg_C:150:9.41e-23:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007825::NC_004722.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2511158-2512845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBC2538%2CBC_2538RefSeq proteinWP_000239010.1
Context group ID
GCF_000007825::NC_004722.1::G00029Context members
BC_RS12705BC_RS12710
Partner locus tags
BC_RS12705BC_RS12710
Partner old locus tags
BC2538%2CBC_2538BC2539%2CBC_2539
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000239010.1Primary protein accession used for annex mappings.
UniProt accessionQ81D44Primary UniProt accession resolved in the annex database.
UniProt IDQ81D44_BACCRDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBC_RS12705Primary locus identifier stored in the genes table.
Old locus tagBC2538%2CBC_2538Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004722.1Sequence record reported by the local genomic context database.
Genomic interval2 511 158-2 511 865 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 511 158-2 512 845 ntGCF_000007825::NC_004722.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007825::NC_004722.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004722.1All displayed genes belong to this local TCS context.
Neighborhood span2 511 158-2 512 845 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 511 158 nt2 512 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BC_RS12705GCF_000007825#BC_RS12705
RROmpRCurrent focus
2 511 158-2 511 865 nt · Forward (+)
BC_RS12710GCF_000007825#BC_RS12710
HKClassic
2 511 862-2 512 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS12705The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016385
Simplified PFAM architecture for RROC_1016385
PFAM domain coverage: 184 / 235 aa (78.3%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1016385
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS12705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 226 900 · GCF_000007825
AssemblyASM782v1 · Complete Genomehaploid
Genome composition5 427 083 bp · 35,5% GCBacillus cereus ATCC 14579
Signal transduction countsGenes 98 · HK 54 · RR 44CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key