1 HisKA_3#1
149-216 aa · 68 aa · 19.4% of protein
Raw token
HisKA_3:149:1.36e-22:216:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BC_RS07135
Histidine kinase, Classic
Bacillus cereus ATCC 14579 · GCF_000007825
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007825#BC_RS07135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 351 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-342 aa · 91 aa · 25.9% of protein
Raw token
HATPase_c:252:6.04e-16:342:106:109- Raw architecture: HisKA_3:149:1.36e-22:216:68:68#HATPase_c:252:6.04e-16:342:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007825::NC_004722.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1398412-1400096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBC1438%2CBC_1438RefSeq proteinWP_000795776.1
Context group ID
GCF_000007825::NC_004722.1::G00016Context members
BC_RS07135BC_RS07140
Partner locus tags
BC_RS07135BC_RS07140
Partner old locus tags
BC1438%2CBC_1438BC1439%2CBC_1439
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000795776.1Primary protein accession used for annex mappings.
UniProt accessionQ81FX4Primary UniProt accession resolved in the annex database.
UniProt IDQ81FX4_BACCRDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBC_RS07135Primary locus identifier stored in the genes table.
Old locus tagBC1438%2CBC_1438Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004722.1Sequence record reported by the local genomic context database.
Genomic interval1 398 412-1 399 467 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 398 412-1 400 096 ntGCF_000007825::NC_004722.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007825::NC_004722.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004722.1All displayed genes belong to this local TCS context.
Neighborhood span1 398 412-1 400 096 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 398 412 nt1 400 096 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BC_RS07135GCF_000007825#BC_RS07135
HKClassicCurrent focus
1 398 412-1 399 467 nt · Forward (+)
BC_RS07140GCF_000007825#BC_RS07140
RRNarL
1 399 464-1 400 096 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS07135The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792517
Simplified PFAM architecture for HKOC_2792517
PFAM domain coverage: 160 / 351 aa (45.6%)
1 aa351 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[149-216] | HATPase_c[252-343]
- Domain count: 2
- Matched identifier: HKOC_2792517
- Positioned domains: HisKA_3 149-216 ; HATPase_c 252-343
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS07135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 226 900 · GCF_000007825
AssemblyASM782v1 · Complete Genomehaploid
Genome composition5 427 083 bp · 35,5% GCBacillus cereus ATCC 14579
Signal transduction countsGenes 98 · HK 54 · RR 44CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key