1 Response_reg#1
4-115 aa · 112 aa · 51.4% of protein
Raw token
Response_reg:4:7.18e-20:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BC_RS04420
Response regulator NarL family
Bacillus cereus ATCC 14579 · GCF_000007825
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007825#BC_RS04420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 218 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-207 aa · 56 aa · 25.7% of protein
Raw token
HTH_LUXR:152:0.000000000000069:207:56:58- Raw architecture: Response_reg:4:7.18e-20:115:112:111#HTH_LUXR:152:0.000000000000069:207:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007825::NC_004722.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span859008-862003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBC0882%2CBC_0882RefSeq proteinWP_000626498.1
Context group ID
GCF_000007825::NC_004722.1::G00008Context members
BC_RS04415BC_RS04420
Partner locus tags
BC_RS04415BC_RS04420
Partner old locus tags
BC0881%2CBC_0881BC0882%2CBC_0882
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000626498.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6IUQ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6IUQ0_BACUDDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBC_RS04420Primary locus identifier stored in the genes table.
Old locus tagBC0882%2CBC_0882Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004722.1Sequence record reported by the local genomic context database.
Genomic interval861 347-862 003 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span859 008-862 003 ntGCF_000007825::NC_004722.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007825::NC_004722.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004722.1All displayed genes belong to this local TCS context.
Neighborhood span859 008-862 003 nt2 996 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
859 008 nt862 003 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BC_RS04415GCF_000007825#BC_RS04415
HKClassic
859 008-861 311 nt · Forward (+)
BC_RS04420GCF_000007825#BC_RS04420
RRNarLCurrent focus
861 347-862 003 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS04420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1811982
Simplified PFAM architecture for RROC_1811982
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[153-207]
- Domain count: 2
- Matched identifier: RROC_1811982
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 153-207 ; GerE 153-207
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS04420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 226 900 · GCF_000007825
AssemblyASM782v1 · Complete Genomehaploid
Genome composition5 427 083 bp · 35,5% GCBacillus cereus ATCC 14579
Signal transduction countsGenes 98 · HK 54 · RR 44CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key