1 Response_reg#1
6-118 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:6:2.71e-24:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAG_RS04370
Response regulator NarL family
Streptococcus agalactiae 2603V/R · GCF_000007265
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007265#SAG_RS04370Stable P2CS identifier used across views.
GenomeGCF_000007265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 213 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
145-202 aa · 58 aa · 27.2% of protein
Raw token
HTH_LUXR:145:4.32e-25:202:58:58- Raw architecture: Response_reg:6:2.71e-24:118:113:111#HTH_LUXR:145:4.32e-25:202:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007265::NC_004116.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span330906-332559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAG0322RefSeq proteinWP_000357892.1
Context group ID
GCF_000007265::NC_004116.1::G00004Context members
SAG_RS04365SAG_RS04370
Partner locus tags
SAG_RS04365SAG_RS04370
Partner old locus tags
SAG0321SAG0322
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000357892.1Primary protein accession used for annex mappings.
UniProt accessionQ8E1N2Primary UniProt accession resolved in the annex database.
UniProt IDQ8E1N2_STRA5Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAG_RS04370Primary locus identifier stored in the genes table.
Old locus tagSAG0322Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004116.1Sequence record reported by the local genomic context database.
Genomic interval331 918-332 559 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span330 906-332 559 ntGCF_000007265::NC_004116.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007265::NC_004116.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004116.1All displayed genes belong to this local TCS context.
Neighborhood span330 906-332 559 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
330 906 nt332 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAG_RS04365GCF_000007265#SAG_RS04365
HKClassic
330 906-331 925 nt · Forward (+)
SAG_RS04370GCF_000007265#SAG_RS04370
RRNarLCurrent focus
331 918-332 559 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS04370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962487
Simplified PFAM architecture for RROC_1962487
PFAM domain coverage: 168 / 213 aa (78.9%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[148-202]
- Domain count: 2
- Matched identifier: RROC_1962487
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GerE 148-202 ; GerE 148-202
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS04370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 208 435 · GCF_000007265
AssemblyASM726v1 · Complete Genomehaploid
Genome composition2 160 267 bp · 35,5% GCStreptococcus agalactiae 2603V/R
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key