1 Response_reg#1
27-92 aa · 66 aa · 68.0% of protein
Raw token
Response_reg:27:6.73e-16:92:66:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SF0466
Response regulator, CheY family
Shigella flexneri 2a str. 301 · GCF_000006925
ClassRRTypeCheYLength97 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006925#SF0466Stable P2CS identifier used across views.
GenomeGCF_000006925Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length97 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage66 / 97 aa (68.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa97 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:27:6.73e-16:92:66:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006925::NC_004337.2::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span479460-479753Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000006925::NC_004337.2::G00002Context members
SF0466
Partner locus tags
SF0466
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqNP_706413.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2UXI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2UXI6_SHIFLDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSF0466Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_004337.2Sequence record reported by the local genomic context database.
Genomic interval479 460-479 753 nt294 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span479 460-479 753 ntGCF_000006925::NC_004337.2::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006925::NC_004337.2::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004337.2All displayed genes belong to this local TCS context.
Neighborhood span479 460-479 753 nt294 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
479 460 nt479 753 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SF0466GCF_000006925#SF0466
RRCheYCurrent focus
479 460-479 753 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472399
Simplified PFAM architecture for RROC_2472399
PFAM domain coverage: 66 / 97 aa (68.0%)
1 aa97 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[27-92]
- Domain count: 1
- Matched identifier: RROC_2472399
- Positioned domains: Response_reg 27-92 ; Response_reg 27-92
Cluster members and taxonomy
Representative gene: GCF_000006925#SF0466
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 198 214 · GCF_000006925
AssemblyASM692v2 · Complete Genomereference genome · haploid
Genome composition4 828 820 bp · 50,5% GCShigella flexneri 2a str. 301
Signal transduction countsGenes 54 · HK 25 · RR 29CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key