1 Response_reg#1
3-112 aa · 110 aa · 50.7% of protein
Raw token
Response_reg:3:7.02e-29:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SP_RS11200
Response regulator OmpR family
Streptococcus pneumoniae TIGR4 · GCF_000006885
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006885#SP_RS11200Stable P2CS identifier used across views.
GenomeGCF_000006885Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 217 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:143:1.33e-23:215:78:77- Raw architecture: Response_reg:3:7.02e-29:112:111:111#Trans_reg_C:143:1.33e-23:215:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006885::NC_003028.3::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2112785-2114766Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSP_2193RefSeq proteinWP_001024077.1
Context group ID
GCF_000006885::NC_003028.3::G00013Context members
SP_RS11195SP_RS11200
Partner locus tags
SP_RS11195SP_RS11200
Partner old locus tags
SP_2192SP_2193
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001024077.1Primary protein accession used for annex mappings.
UniProt accessionC1CHJ3Primary UniProt accession resolved in the annex database.
UniProt IDC1CHJ3_STRZJDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSP_RS11200Primary locus identifier stored in the genes table.
Old locus tagSP_2193Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_003028.3Sequence record reported by the local genomic context database.
Genomic interval2 114 113-2 114 766 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 112 785-2 114 766 ntGCF_000006885::NC_003028.3::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006885::NC_003028.3::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_003028.3All displayed genes belong to this local TCS context.
Neighborhood span2 112 785-2 114 766 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 112 785 nt2 114 766 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SP_RS11195GCF_000006885#SP_RS11195
HKClassic
2 112 785-2 114 116 nt · Reverse (-)
SP_RS11200GCF_000006885#SP_RS11200
RROmpRCurrent focus
2 114 113-2 114 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006885#SP_RS11200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847436
Simplified PFAM architecture for RROC_1847436
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[144-214]
- Domain count: 2
- Matched identifier: RROC_1847436
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 144-214 ; Trans_reg_C 144-214
Cluster members and taxonomy
Representative gene: GCF_000006885#SP_RS11200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 170 187 · GCF_000006885
AssemblyASM688v1 · Complete Genomehaploid
Genome composition2 160 842 bp · 39,5% GCStreptococcus pneumoniae TIGR4
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key