1 His_kinase#1
372-450 aa · 79 aa · 14.0% of protein
Raw token
His_kinase:372:2.98e-32:450:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS19865
Histidine kinase, Classic
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS19865Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 565 aa (29.9%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
470-559 aa · 90 aa · 15.9% of protein
Raw token
HATPase_c:470:0.0000000441:559:106:109- Raw architecture: His_kinase:372:2.98e-32:450:80:80#HATPase_c:470:0.0000000441:559:106:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4334309-4336006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy3885RefSeq proteinWP_002209502.1
Context group ID
GCF_000006645::NC_004088.1::G00033Context members
Y_RS19865
Partner locus tags
Y_RS19865
Partner old locus tags
y3885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002209502.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YLL5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YLL5_YERPNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS19865Primary locus identifier stored in the genes table.
Old locus tagy3885Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval4 334 309-4 336 006 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 334 309-4 336 006 ntGCF_000006645::NC_004088.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span4 334 309-4 336 006 nt1 698 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 334 309 nt4 336 006 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS19865GCF_000006645#Y_RS19865
HKClassicCurrent focus
4 334 309-4 336 006 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS19865The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1234000
Simplified PFAM architecture for HKOC_1234000
PFAM domain coverage: 248 / 565 aa (43.9%)
1 aa565 aa
5TM-5TMR_LYTHis_kinase
- Simplified architecture: 5TM-5TMR_LYT + His_kinase
- Raw architecture: 5TM-5TMR_LYT[29-198] | His_kinase[373-450]
- Domain count: 2
- Matched identifier: HKOC_1234000
- Positioned domains: 5TM-5TMR_LYT 29-198 ; His_kinase 373-450
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS19865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key