1 Response_reg#1
4-112 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:4:3.46e-29:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS04715
Response regulator LytTR family
Yersinia pestis KIM10+ · GCF_000006645
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS04715Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 238 aa (85.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-236 aa · 95 aa · 39.9% of protein
Raw token
LytTR:142:2.32e-30:236:98:98- Raw architecture: Response_reg:4:3.46e-29:112:113:111#LytTR:142:2.32e-30:236:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1010428-1011144Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy0902RefSeq proteinWP_002223245.1
Context group ID
GCF_000006645::NC_004088.1::G00006Context members
Y_RS04715
Partner locus tags
Y_RS04715
Partner old locus tags
y0902
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002223245.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YGG5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YGG5_YERPNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS04715Primary locus identifier stored in the genes table.
Old locus tagy0902Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 010 428-1 011 144 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 010 428-1 011 144 ntGCF_000006645::NC_004088.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 010 428-1 011 144 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 010 428 nt1 011 144 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS04715GCF_000006645#Y_RS04715
RRLytTRCurrent focus
1 010 428-1 011 144 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS04715The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932201
Simplified PFAM architecture for RROC_0932201
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[143-235]
- Domain count: 2
- Matched identifier: RROC_0932201
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 143-235 ; LytTR 143-235
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS04715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key