1 Response_reg#1
5-113 aa · 109 aa · 51.9% of protein
Raw token
Response_reg:5:6.91e-31:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS12290
Response regulator NarL family
Yersinia pestis KIM10+ · GCF_000006645
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006645#Y_RS12290Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 210 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-204 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:147:9.83e-24:204:58:58- Raw architecture: Response_reg:5:6.91e-31:113:109:111#HTH_LUXR:147:9.83e-24:204:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006645::NC_004088.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2634154-2638612Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy2386RefSeq proteinWP_002212073.1
Context group ID
GCF_000006645::NC_004088.1::G00022Context members
Y_RS12290Y_RS12295
Partner locus tags
Y_RS12290Y_RS12295
Partner old locus tags
y2386y2387
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002212073.1Primary protein accession used for annex mappings.
UniProt accessionA0A0U1QUG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0U1QUG1_YERP3Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS12290Primary locus identifier stored in the genes table.
Old locus tagy2386Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval2 634 154-2 634 786 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 634 154-2 638 612 ntGCF_000006645::NC_004088.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span2 634 154-2 638 612 nt4 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 634 154 nt2 638 612 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS12290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2018826
Simplified PFAM architecture for RROC_2018826
PFAM domain coverage: 165 / 210 aa (78.6%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-113] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_2018826
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS12290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key