1 Response_reg#1
6-108 aa · 103 aa · 29.5% of protein
Raw token
Response_reg:6:7.57e-26:108:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS09485
Response regulator, CheB family
Yersinia pestis KIM10+ · GCF_000006645
ClassRRTypeCheBLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006645#Y_RS09485Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage282 / 349 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
159-337 aa · 179 aa · 51.3% of protein
Raw token
CheB_methylest:159:9.25e-95:337:180:177- Raw architecture: Response_reg:6:7.57e-26:108:104:111#CheB_methylest:159:9.25e-95:337:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006645::NC_004088.1::G00017
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span2030850-2032389Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1841RefSeq proteinWP_002210874.1
Context group ID
GCF_000006645::NC_004088.1::G00017Context members
Y_RS09485Y_RS09490
Partner locus tags
Y_RS09485Y_RS09490
Partner old locus tags
y1841y1842
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002210874.1Primary protein accession used for annex mappings.
UniProt accessionA0A0U1QZ12Primary UniProt accession resolved in the annex database.
UniProt IDA0A0U1QZ12_YERP3Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS09485Primary locus identifier stored in the genes table.
Old locus tagy1841Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval2 030 850-2 031 899 nt1 050 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 030 850-2 032 389 ntGCF_000006645::NC_004088.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span2 030 850-2 032 389 nt1 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 030 850 nt2 032 389 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS09485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0481943
Simplified PFAM architecture for RROC_0481943
PFAM domain coverage: 281 / 349 aa (80.5%)
1 aa349 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[6-108] | CheB_methylest[159-336]
- Domain count: 2
- Matched identifier: RROC_0481943
- Positioned domains: Response_reg 6-108 ; Response_reg 6-108 ; CheB_methylest 159-336 ; CheB_methylest 159-336
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS09485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key