1 Hpt#1
6-77 aa · 72 aa · 10.0% of protein
Raw token
Hpt:6:0.0000000000000105:77:72:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS09425
Histidine kinase, CheA
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeCheALength721 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS09425Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length721 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage400 / 721 aa (55.5%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa721 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
327-388 aa · 62 aa · 8.6% of protein
Raw token
H-kinase_dim:327:4.64e-18:388:66:673 HATPase_c#3
435-572 aa · 138 aa · 19.1% of protein
Raw token
HATPase_c:435:0.00000000000000123:572:138:1094 CheW#4
577-704 aa · 128 aa · 17.8% of protein
Raw token
CheW:577:4.42e-27:704:134:138- Raw architecture: Hpt:6:0.0000000000000105:77:72:84#H-kinase_dim:327:4.64e-18:388:66:67#HATPase_c:435:0.00000000000000123:572:138:109#CheW:577:4.42e-27:704:134:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2011061-2013226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1827RefSeq proteinWP_002210886.1
Context group ID
GCF_000006645::NC_004088.1::G00016Context members
Y_RS09425
Partner locus tags
Y_RS09425
Partner old locus tags
y1827
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002210886.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YHI5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YHI5_YERPNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS09425Primary locus identifier stored in the genes table.
Old locus tagy1827Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval2 011 061-2 013 226 nt2 166 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 011 061-2 013 226 ntGCF_000006645::NC_004088.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span2 011 061-2 013 226 nt2 166 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 011 061 nt2 013 226 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS09425GCF_000006645#Y_RS09425
HKCheACurrent focus
2 011 061-2 013 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS09425The current gene is the representative for this cluster.
PFAM architectureHpt + CheY-binding + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0730470
Simplified PFAM architecture for HKOC_0730470
PFAM domain coverage: 481 / 721 aa (66.7%)
1 aa721 aa
HptCheY-bindingH-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + CheY-binding + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[6-95] | CheY-binding[181-243] | H-kinase_dim[325-388] | HATPase_c[436-572] | CheW[578-704]
- Domain count: 5
- Matched identifier: HKOC_0730470
- Positioned domains: Hpt 6-95 ; CheY-binding 181-243 ; H-kinase_dim 325-388 ; HATPase_c 436-572 ; CheW 578-704
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS09425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key