1 PhoQ_Sensor#1
8-186 aa · 179 aa · 37.0% of protein
Raw token
PhoQ_Sensor:8:1.31e-124:186:179:179P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS09260
Histidine kinase, Classic
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006645#Y_RS09260Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
PhoQ_SensorHAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage411 / 484 aa (84.9%)Merged over positioned domains only.
Domain description1 PhoQ_Sensor,1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation4 items
2 HAMP#2
192-260 aa · 69 aa · 14.3% of protein
Raw token
HAMP:192:0.0000000000223:260:69:693 HisKA#3
269-328 aa · 60 aa · 12.4% of protein
Raw token
HisKA:269:0.000000462:328:60:644 HATPase_c#4
373-475 aa · 103 aa · 21.3% of protein
Raw token
HATPase_c:373:7.79e-22:475:105:109- Raw architecture: PhoQ_Sensor:8:1.31e-124:186:179:179#HAMP:192:0.0000000000223:260:69:69#HisKA:269:0.000000462:328:60:64#HATPase_c:373:7.79e-22:475:105:109
- Domain description: 1 PhoQ_Sensor,1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006645::NC_004088.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1973766-1975897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1793RefSeq proteinWP_002210918.1
Context group ID
GCF_000006645::NC_004088.1::G00015Context members
Y_RS09260Y_RS09265
Partner locus tags
Y_RS09260Y_RS09265
Partner old locus tags
y1793y1794
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002210918.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YHM8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YHM8_YERPNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS09260Primary locus identifier stored in the genes table.
Old locus tagy1793Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 973 766-1 975 220 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 973 766-1 975 897 ntGCF_000006645::NC_004088.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 973 766-1 975 897 nt2 132 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 973 766 nt1 975 897 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS09260The current gene is the representative for this cluster.
PFAM architecturePhoQ_Sensor + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1583984
Simplified PFAM architecture for HKOC_1583984
PFAM domain coverage: 390 / 484 aa (80.6%)
1 aa484 aa
PhoQ_SensorHAMPHisKAHATPase_c
- Simplified architecture: PhoQ_Sensor + HAMP + HisKA + HATPase_c
- Raw architecture: PhoQ_Sensor[8-185] | HAMP[210-259] | HisKA[267-327] | HATPase_c[375-475]
- Domain count: 4
- Matched identifier: HKOC_1583984
- Positioned domains: PhoQ_Sensor 8-185 ; HAMP 210-259 ; HisKA 267-327 ; HATPase_c 375-475
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS09260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key