1 HisKA#1
284-347 aa · 64 aa · 12.5% of protein
Raw token
HisKA:284:4.08e-16:347:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS07690
Histidine kinase, Classic
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006645#Y_RS07690Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 514 aa (34.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
391-502 aa · 112 aa · 21.8% of protein
Raw token
HATPase_c:391:3.45e-28:502:113:109- Raw architecture: HisKA:284:4.08e-16:347:64:64#HATPase_c:391:3.45e-28:502:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006645::NC_004088.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1631521-1633769Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1473RefSeq proteinWP_002208505.1
Context group ID
GCF_000006645::NC_004088.1::G00013Context members
Y_RS07685Y_RS07690
Partner locus tags
Y_RS07685Y_RS07690
Partner old locus tags
y1472y1473
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002208505.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YG35Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YG35_YERPNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS07690Primary locus identifier stored in the genes table.
Old locus tagy1473Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 632 225-1 633 769 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 631 521-1 633 769 ntGCF_000006645::NC_004088.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 631 521-1 633 769 nt2 249 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 631 521 nt1 633 769 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS07690The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411225
Simplified PFAM architecture for HKOC_1411225
PFAM domain coverage: 175 / 514 aa (34.0%)
1 aa514 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[283-347] | HATPase_c[392-501]
- Domain count: 2
- Matched identifier: HKOC_1411225
- Positioned domains: HisKA 283-347 ; HATPase_c 392-501
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key