1 Response_reg#1
14-123 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:14:1.73e-32:123:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS07235
Response regulator OmpR family
Yersinia pestis KIM10+ · GCF_000006645
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS07235Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:155:3.58e-29:231:77:77- Raw architecture: Response_reg:14:1.73e-32:123:111:111#Trans_reg_C:155:3.58e-29:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1529551-1530270Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1381RefSeq proteinWP_002209796.1
Context group ID
GCF_000006645::NC_004088.1::G00011Context members
Y_RS07235
Partner locus tags
Y_RS07235
Partner old locus tags
y1381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002209796.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YGW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YGW8_YERPNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS07235Primary locus identifier stored in the genes table.
Old locus tagy1381Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 529 551-1 530 270 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 529 551-1 530 270 ntGCF_000006645::NC_004088.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 529 551-1 530 270 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 529 551 nt1 530 270 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS07235GCF_000006645#Y_RS07235
RROmpRCurrent focus
1 529 551-1 530 270 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS07235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905276
Simplified PFAM architecture for RROC_0905276
PFAM domain coverage: 185 / 239 aa (77.4%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[14-123] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_0905276
- Positioned domains: Response_reg 14-123 ; Response_reg 14-123 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS07235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key