1 Response_reg#1
10-119 aa · 110 aa · 24.7% of protein
Raw token
Response_reg:10:6.61e-39:119:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS06915
Response regulator, unclassified
Yersinia pestis KIM10+ · GCF_000006645
ClassRRTypeunclassifiedLength445 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS06915Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage230 / 445 aa (51.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa445 aa
Domain-by-domain annotation2 items
2 AAA_5#2
160-279 aa · 120 aa · 27.0% of protein
Raw token
AAA_5:160:0.00000069:279:123:135- Raw architecture: Response_reg:10:6.61e-39:119:110:111#AAA_5:160:0.00000069:279:123:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1461885-1463222Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1315RefSeq proteinWP_002211556.1
Context group ID
GCF_000006645::NC_004088.1::G00010Context members
Y_RS06915
Partner locus tags
Y_RS06915
Partner old locus tags
y1315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002211556.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YFP5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YFP5_YERPNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS06915Primary locus identifier stored in the genes table.
Old locus tagy1315Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 461 885-1 463 222 nt1 338 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 461 885-1 463 222 ntGCF_000006645::NC_004088.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 461 885-1 463 222 nt1 338 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 461 885 nt1 463 222 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS06915GCF_000006645#Y_RS06915
RRunclassifiedCurrent focus
1 461 885-1 463 222 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS06915The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_143 domains in the representative PFAM annotation.
PFAM architecture for RROC_0311825
Simplified PFAM architecture for RROC_0311825
PFAM domain coverage: 352 / 445 aa (79.1%)
1 aa445 aa
Response_regSigma54_activatAAA_lid_14
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14
- Raw architecture: Response_reg[10-118] | Sigma54_activat[137-303] | AAA_lid_14[310-385]
- Domain count: 3
- Matched identifier: RROC_0311825
- Positioned domains: Response_reg 10-118 ; Response_reg 10-118 ; Sigma54_activat 137-303 ; Sigma54_activat 137-303 ; AAA_lid_14 310-385 ; AAA_lid_14 310-385
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS06915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key