1 HAMP#1
178-246 aa · 69 aa · 14.4% of protein
Raw token
HAMP:178:0.0000000744:246:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS06905
Histidine kinase, Classic
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeClassicLength478 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS06905Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 478 aa (51.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-316 aa · 65 aa · 13.6% of protein
Raw token
HisKA:252:0.000000000000153:316:65:643 HATPase_c#3
365-474 aa · 110 aa · 23.0% of protein
Raw token
HATPase_c:365:4.3e-21:474:110:109- Raw architecture: HAMP:178:0.0000000744:246:69:69#HisKA:252:0.000000000000153:316:65:64#HATPase_c:365:4.3e-21:474:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1459415-1460851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy1313RefSeq proteinWP_002216114.1
Context group ID
GCF_000006645::NC_004088.1::G00009Context members
Y_RS06905
Partner locus tags
Y_RS06905
Partner old locus tags
y1313
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002216114.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YFR9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YFR9_YERPNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS06905Primary locus identifier stored in the genes table.
Old locus tagy1313Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 459 415-1 460 851 nt1 437 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 459 415-1 460 851 ntGCF_000006645::NC_004088.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 459 415-1 460 851 nt1 437 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 459 415 nt1 460 851 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS06905GCF_000006645#Y_RS06905
HKClassicCurrent focus
1 459 415-1 460 851 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS06905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1636852
Simplified PFAM architecture for HKOC_1636852
PFAM domain coverage: 175 / 478 aa (36.6%)
1 aa478 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[253-317] | HATPase_c[365-474]
- Domain count: 2
- Matched identifier: HKOC_1636852
- Positioned domains: HisKA 253-317 ; HATPase_c 365-474
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key