1 PAS#1
98-194 aa · 97 aa · 22.1% of protein
Raw token
PAS:98:0.0000000000323:194:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS05160
Histidine kinase, Classic
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006645#Y_RS05160Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage273 / 438 aa (62.3%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
203-268 aa · 66 aa · 15.1% of protein
Raw token
HisKA:203:6.64e-19:268:66:643 HATPase_c#3
313-422 aa · 110 aa · 25.1% of protein
Raw token
HATPase_c:313:1.07e-32:422:110:109- Raw architecture: PAS:98:0.0000000000323:194:113:113#HisKA:203:6.64e-19:268:66:64#HATPase_c:313:1.07e-32:422:110:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006645::NC_004088.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1107221-1109251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy0979RefSeq proteinWP_002208684.1
Context group ID
GCF_000006645::NC_004088.1::G00007Context members
Y_RS05155Y_RS05160
Partner locus tags
Y_RS05155Y_RS05160
Partner old locus tags
y0978y0979
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002208684.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YGL7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YGL7_YERPNDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS05160Primary locus identifier stored in the genes table.
Old locus tagy0979Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval1 107 935-1 109 251 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 107 221-1 109 251 ntGCF_000006645::NC_004088.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span1 107 221-1 109 251 nt2 031 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 107 221 nt1 109 251 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS05160The current gene is the representative for this cluster.
PFAM architecturePhoR + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2092658
Simplified PFAM architecture for HKOC_2092658
PFAM domain coverage: 359 / 438 aa (82.0%)
1 aa438 aa
PhoRPASHisKAHATPase_c
- Simplified architecture: PhoR + PAS + HisKA + HATPase_c
- Raw architecture: PhoR[6-91] | PAS[99-194] | HisKA[203-268] | HATPase_c[313-423]
- Domain count: 4
- Matched identifier: HKOC_2092658
- Positioned domains: PhoR 6-91 ; PAS 99-194 ; HisKA 203-268 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS05160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key