1 HAMP#1
299-368 aa · 70 aa · 7.5% of protein
Raw token
HAMP:299:0.0000208:368:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS02710
Histidine kinase, Unorthodox
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeUnorthodoxLength939 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006645#Y_RS02710Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_cResponse_regHpt
Protein length939 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage429 / 939 aa (45.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa939 aa
Domain-by-domain annotation5 items
2 HisKA#2
397-462 aa · 66 aa · 7.0% of protein
Raw token
HisKA:397:1.2e-16:462:66:643 HATPase_c#3
510-614 aa · 105 aa · 11.2% of protein
Raw token
HATPase_c:510:1.91e-37:614:106:1094 Response_reg#4
696-810 aa · 115 aa · 12.2% of protein
Raw token
Response_reg:696:9.45e-26:810:115:1115 Hpt#5
847-919 aa · 73 aa · 7.8% of protein
Raw token
Hpt:847:0.000000106:919:76:84- Raw architecture: HAMP:299:0.0000208:368:70:69#HisKA:397:1.2e-16:462:66:64#HATPase_c:510:1.91e-37:614:106:109#Response_reg:696:9.45e-26:810:115:111#Hpt:847:0.000000106:919:76:84
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006645::NC_004088.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span581872-585336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy0513RefSeq proteinWP_002209035.1
Context group ID
GCF_000006645::NC_004088.1::G00003Context members
Y_RS02705Y_RS02710
Partner locus tags
Y_RS02705Y_RS02710
Partner old locus tags
y0512y0513
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002209035.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YL61Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YL61_YERPNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS02710Primary locus identifier stored in the genes table.
Old locus tagy0513Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval582 517-585 336 nt2 820 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span581 872-585 336 ntGCF_000006645::NC_004088.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span581 872-585 336 nt3 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
581 872 nt585 336 nt
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS02710The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0341167
Simplified PFAM architecture for HKOC_0341167
PFAM domain coverage: 353 / 939 aa (37.6%)
1 aa939 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[398-462] | HATPase_c[510-615] | Response_reg[696-809] | Hpt[847-914]
- Domain count: 4
- Matched identifier: HKOC_0341167
- Positioned domains: HisKA 398-462 ; HATPase_c 510-615 ; Response_reg 696-809 ; Hpt 847-914
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS02710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key