1 PAS#1
155-266 aa · 112 aa · 14.4% of protein
Raw token
PAS:155:9.87e-19:266:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y_RS00615
Histidine kinase, Unorthodox
Yersinia pestis KIM10+ · GCF_000006645
ClassHKTypeUnorthodoxLength778 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000006645#Y_RS00615Stable P2CS identifier used across views.
GenomeGCF_000006645Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_cResponse_regHpt
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage473 / 778 aa (60.8%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa778 aa
Domain-by-domain annotation5 items
2 HisKA#2
283-345 aa · 63 aa · 8.1% of protein
Raw token
HisKA:283:0.00000000000000454:345:63:643 HATPase_c#3
394-506 aa · 113 aa · 14.5% of protein
Raw token
HATPase_c:394:1.25e-35:506:113:1094 Response_reg#4
527-639 aa · 113 aa · 14.5% of protein
Raw token
Response_reg:527:9.51e-30:639:114:1115 Hpt#5
686-757 aa · 72 aa · 9.3% of protein
Raw token
Hpt:686:0.0000000000000538:757:76:84- Raw architecture: PAS:155:9.87e-19:266:113:113#HisKA:283:0.00000000000000454:345:63:64#HATPase_c:394:1.25e-35:506:113:109#Response_reg:527:9.51e-30:639:114:111#Hpt:686:0.0000000000000538:757:76:84
- Domain description: 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000006645::NC_004088.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span132561-134897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagy0126RefSeq proteinWP_002210142.1
Context group ID
GCF_000006645::NC_004088.1::G00002Context members
Y_RS00615
Partner locus tags
Y_RS00615
Partner old locus tags
y0126
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002210142.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H2YMU5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H2YMU5_YERPNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY_RS00615Primary locus identifier stored in the genes table.
Old locus tagy0126Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004088.1Sequence record reported by the local genomic context database.
Genomic interval132 561-134 897 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 561-134 897 ntGCF_000006645::NC_004088.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006645::NC_004088.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004088.1All displayed genes belong to this local TCS context.
Neighborhood span132 561-134 897 nt2 337 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 561 nt134 897 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Y_RS00615GCF_000006645#Y_RS00615
HKUnorthodoxCurrent focus
132 561-134 897 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006645#Y_RS00615The current gene is the representative for this cluster.
PFAM architectureHKR_ArcB_TM + PAS + HisKA + HATPase_c + Response_reg + Hpt6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598798
Simplified PFAM architecture for HKOC_0598798
PFAM domain coverage: 558 / 778 aa (71.7%)
1 aa778 aa
HKR_ArcB_TMPASHisKAHATPase_cResponse_regHpt
- Simplified architecture: HKR_ArcB_TM + PAS + HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HKR_ArcB_TM[15-88] | PAS[156-266] | HisKA[283-345] | HATPase_c[395-505] | Response_reg[527-639] | Hpt[685-770]
- Domain count: 6
- Matched identifier: HKOC_0598798
- Positioned domains: HKR_ArcB_TM 15-88 ; PAS 156-266 ; HisKA 283-345 ; HATPase_c 395-505 ; Response_reg 527-639 ; Hpt 685-770
Cluster members and taxonomy
Representative gene: GCF_000006645#Y_RS00615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 187 410 · GCF_000006645
AssemblyASM664v1 · Complete Genomehaploid
Genome composition4 701 745 bp · 47,5% GCYersinia pestis KIM10+
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key